Genes, Minds, Machines
Claus WilkeGenes, Minds, Machines: Thoughts about Science, Communication, and AI. A newsletter covering topics in biology, data visualization, effective communication, AI, and higher education.
| Platform |  | Pricing | Only free issues | Publishes | Twice weekly |
|---|---|---|---|---|---|
| Issues | 41 | Founded | a year ago | Last Issue | 2 months ago |
| Active | |||||
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blog.genesmindsmachines.comLatest Issues
The Google Scholar preprint bug strikes again
For the last couple of weeks, Google Scholar has been complaining to me that one of my articles is not publicly available, in violation of a funder-imposed public access mandate. When I go to my Google Scholar page, there is a big notificat...
Creating reproducible data analysis pipelines
There was a discussion recently on Bluesky about reproducible data analysis pipelines. This is a complex topic, and it’s difficult to do it justice in a bunch of 300 character posts. So I thought I’d take the opportunity to collect my thoug...
Protein language models are bad at mutational effect prediction
Last summer, I wrote a post claiming that protein language models (pLMs) showed poor performance on viral data. At the time, this was a preliminary result based on a handful of datasets, and I said as much. I also said we were going to do m...
Sociopathic AI agents
I took a break from Substacking for a while due to other responsibilities. As they are slowly getting under control I plan to write somewhat regularly again going forward. I still have two articles to complete in my series on Python as a la...
Python is not a great language for data science. Part 2: Language features
This is Part 2 of my series on the limitations of Python as a language for data science. You can find Part 1 here. Please read it first if you haven’t done so yet. It provides important context.
I normally find it tedious to discuss suitab...
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Science, Communication, AI
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