The Merge
Jacob PettitPapers and code that are on my radar, sent out once a week. Focusing on machine learning (ML) and ML for Bio.
| Platform |  | Pricing | Only free issues | Publishes | Weekly |
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| Issues | 46 | Founded | 5 years ago | Last Issue | 7 months ago |
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Hot Topics #33
BoltzGen header image from the GitHub repository.
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BoltzGen: Stark et al.: Oct 26, 2025
Abstract: We introduce BoltzGen, an all-atom generative model for designing proteins and peptides across all modalities to bind a wi...
Hot Topics #32
Figure from “Efficient generation of epitope-targeted de novo antibodies with Germinal.”
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Efficient generation of epitope-targeted de novo antibodies with Germinal: Mille-Fragoso et al.: Sept. 24, 2025
Abstract: Obtainin...
Hot Topics #31 (July 22, 2024)
GIF from FrameFlow repository.
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De Novo Design of Peptide Binders to Conformationally Diverse Targets with Contrastive Language Modeling: Bhat e...
Hot Topics #30 (July 15, 2024)
PDB render from examples for py3Dmol.
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Non-standard proteins in the lenses of AlphaFold3 - case study of amyloids: Wojciechowska et al.: July 12...
Hot Topics #29 (Jul 8, 2024)
Figure from DisCo-Diff blog post
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DisCo-Diff: Enhancing Continuous Diffusion Models with Discrete Latents: Xu et al.: July 24
Abstract: Diffusi...
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Research scientist studying machine learning and its applications. jfpettit.mmm.page
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